snakemake | Snakemake | Snakemake 8.10.7 documentation

Keyword	CPC	PCC	Volume	Score	Length of keyword
snakemake	0.21	1	3604	11	9

Keyword	CPC	PCC	Volume	Score
snakemake	0.33	0.9	2324	69
snakemake tutorial	1.56	0.7	5014	84
snakemake conda	0.15	0.9	4095	67
snakemake github	0.3	0.4	2521	88
snakemake install	0.73	0.7	6948	48
snakemake wildcards	1.13	1	5748	15
snakemake slurm	0.04	0.4	31	14
snakemake workflow	0.43	0.8	5141	79
snakemake dag	0.51	0.6	1031	35
snakemake expand	1.98	0.8	1982	85
snakemake wrapper	1.93	0.5	1629	93
snakemake docker	0.5	0.6	5675	86
snakemake params	0.45	1	7677	91
snakemake rule all	0.35	0.5	5621	18
snakemake checkpoint	0.7	0.6	6881	40
snakemake python	0.34	0.6	3455	55
snakemake temp	1.75	0.7	2823	16
snakemake rnaseq	0.7	0.5	5168	65
snakemake fastqc	0.04	0.5	9470	20
snakemake vs nextflow	0.65	0.5	6459	60
snakemake include	1.1	0.7	4113	31
snakemake report	0.93	0.4	1386	40
snakemake script	0.51	0.6	9444	70
snakemake rule order	0.41	0.3	6828	55
snakemake creating directories as an output	1.02	0.5	1540	52

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Snakemake | Snakemake 8.10.7 documentation - Read the Docs
readthedocs.io

https://snakemake.readthedocs.io/en/stable/

WebSnakemake. The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition.

DA: 35 PA: 13 MOZ Rank: 23

GitHub - snakemake/snakemake: This is the development home …
github.com

https://github.com/snakemake/snakemake

WebThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Snakemake is highly popular, with on average more than 7 new citations per week in 2021, and almost 400k downloads. Workflows are described via a human readable, Python based language.

DA: 35 PA: 52 MOZ Rank: 41

Snakemake
github.io

https://snakemake.github.io/

WebSnakemake. A framework for reproducible data analysis. >11 new citations per week ( old + new paper) >1,000,000 downloads. Open source, MIT licensed. Read the paper Read the docs Tutorial Workflow catalog. Readability and automation.

DA: 84 PA: 95 MOZ Rank: 86

Basics: An example workflow | Snakemake 8.10.7 documentation
readthedocs.io

https://snakemake.readthedocs.io/en/stable/tutorial/basics.html

WebIn the following, we will introduce the Snakemake syntax by creating an example workflow. The workflow comes from the domain of genome analysis. It maps sequencing reads to a reference genome and calls variants on the mapped reads. The tutorial does not require you to know what this is about.

DA: 24 PA: 16 MOZ Rank: 72

Snakemake · GitHub
github.com

https://github.com/snakemake

Web98 followers. https://snakemake.github.io. @johanneskoester. Popular repositories. snakemake snakemake Public. This is the development home of the workflow management system Snakemake. For general information, see. HTML 2.1k 510. snakemake-wrappers snakemake-wrappers Public. This is the development home of the Snakemake wrapper …

DA: 89 PA: 8 MOZ Rank: 73

Snakemake Tutorial | Snakemake 8.10.7 documentation - Read …
readthedocs.io

https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html

WebBackground. Step 1: Mapping reads. Step 2: Generalizing the read mapping rule. Step 3: Sorting read alignments. Step 4: Indexing read alignments and visualizing the DAG of jobs. Step 5: Calling genomic variants. Step 6: Using custom scripts. Step 7: Adding a target rule. Summary. Advanced: Decorating the example workflow.

DA: 90 PA: 23 MOZ Rank: 99

snakemake · PyPI
pypi.org

https://pypi.org/project/snakemake/

Web6 days ago · Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules.

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Releases · snakemake/snakemake · GitHub
github.com

https://github.com/snakemake/snakemake/releases

Websnakemake / snakemake Public. Notifications. Fork 508. Star 2.1k. 3 hours ago. github-actions. v8.10.8. 8465818. Compare. v8.10.8 Latest. 8.10.8 (2024-04-19) Bug Fixes. extend workflow test suite by wildcards with slashes (in order to detect bugs that can occur in executors) ( #2810) ( fc9971b)

DA: 87 PA: 54 MOZ Rank: 13

Snakemake Tutorial
bitbucket.io

https://snakemake.bitbucket.io/snakemake-tutorial.html

WebSnakemake Tutorial. This tutorial introduces the text-based workflow system Snakemake. Snakemake follows the GNU Make paradigm: workflows are defined in terms of rules that define how to create output files from input files. Dependencies between the rules are determined automatically, creating a DAG (directed acyclic graph) of jobs that can be ...

DA: 76 PA: 19 MOZ Rank: 58

Hands-on: Make & Snakemake / Foundations of Data Science
galaxyproject.org

https://training.galaxyproject.org/training-material/topics/data-science/tutorials/snakemake/tutorial.html

WebNov 18, 2021 · What is Make & Snakemake. What is a Makefile/Snakefile. How do these improve pipelines over simple scripts? Why is Snakemake better for scientific research and how can I use it. How do I use conda envs with Snakemake? Objectives: Write a snakefile that does a simple QC and Mapping workflow. Requirements: Foundations of Data Science.

DA: 65 PA: 52 MOZ Rank: 94