foldseek | Foldseek Search Server

Keyword	CPC	PCC	Volume	Score	Length of keyword
foldseek	0.4	0.5	721	25	8

Keyword	CPC	PCC	Volume	Score
foldseek	0.79	0.8	1391	89
foldseek github	1.76	0.1	3250	79
foldseek cluster	0.72	0.8	2146	11
foldseek server	1.59	0.6	4012	69
foldseek search	0.99	0.7	7782	83
foldseek paper	1.34	0.5	9931	61
foldseek 3di	0.01	0.8	1491	77
foldseek database	0.6	1	8220	20
foldseek search server	0.46	0.3	253	42

Search Results related to foldseek on Search Engine

Foldseek Search Server
foldseek.com

https://search.foldseek.com/

WebDatabases & search settings. Foldseek Server offers fast and sensitive protein structure alignments against large protein structure collections.

DA: 69 PA: 1 MOZ Rank: 62

Fast and accurate protein structure search with Foldseek
nature.com

https://www.nature.com/articles/s41587-023-01773-0

WebMay 8, 2023 · Foldseek aligns the structure of a query protein against a database by describing tertiary amino acid interactions within proteins as sequences over a structural alphabet. Foldseek decreases...

DA: 22 PA: 49 MOZ Rank: 45

GitHub - steineggerlab/foldseek: Foldseek enables fast and …
github.com

https://github.com/steineggerlab/foldseek

WebREADME. GPL-3.0 license. Foldseek enables fast and sensitive comparisons of large protein structure sets. Publications. van Kempen M, Kim S, Tumescheit C, Mirdita M, Lee J, Gilchrist C, Söding J, and Steinegger M. Fast and accurate protein structure search with Foldseek. Nature Biotechnology, doi:10.1038/s41587-023-01773-0 (2023)

DA: 20 PA: 39 MOZ Rank: 1

Foldseek - YouTube
youtube.com

https://m.youtube.com/watch?v=k5Rbi22TtOA

WebTopic: Fast and accurate protein structure search with FoldseekPresenter: Prof. Martin Steinegger, Asst Professor of Bioinformatics, Seoul National Universit...

DA: 43 PA: 25 MOZ Rank: 83

Releases · steineggerlab/foldseek · GitHub
github.com

https://github.com/steineggerlab/foldseek/releases

Webfoldseek databases now offers the AlphaFoldDB v4 databases. We have improved hit ranking in Foldseek by multiplying the 3Di/AA bit-score by the geometric mean of alignment LDDT and TMscore, resulting in more accurate rankings. The --format-output prob parameter now returns the probability of homology.

DA: 85 PA: 20 MOZ Rank: 71

Fast and accurate protein structure search with Foldseek - PMC
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10869269/

WebMay 8, 2023 · Abstract. As structure prediction methods are generating millions of publicly available protein structures, searching these databases is becoming a bottleneck. Foldseek aligns the structure of a query protein against a database by describing tertiary amino acid interactions within proteins as sequences over a structural alphabet.

DA: 90 PA: 51 MOZ Rank: 45

Home · steineggerlab/foldseek Wiki · GitHub
github.com

https://github.com/steineggerlab/foldseek/wiki

WebFoldseek runs on modern UNIX operating systems and is tested on Linux and macOS. Additionally, we are providing a preview version for Windows. Foldseek takes advantage of multi-core systems through OpenMP and uses the SIMD capabilities of the system.

DA: 44 PA: 64 MOZ Rank: 99

Foldseek gives AlphaFold protein database a rapid search tool
nature.com

https://www.nature.com/articles/d41586-023-02205-4

WebJun 29, 2023 · Foldseek gives AlphaFold protein database a rapid search tool. The structural search program makes finding proteins with similar 3D shapes easy. By. Matthew Hutson. Foldseek allows researchers...

DA: 45 PA: 26 MOZ Rank: 88

Foldseek: fast and accurate protein structure search | bioRxiv
biorxiv.org

https://www.biorxiv.org/content/10.1101/2022.02.07.479398v2

WebFeb 22, 2022 · Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being four orders of magnitude faster. Foldseek is free open-source software available at foldseek.com and as a webserver at search.foldseek.com.

DA: 79 PA: 21 MOZ Rank: 67

Fast and accurate protein structure search with Foldseek
biorxiv.org

https://www.biorxiv.org/content/10.1101/2022.02.07.479398v5

WebMar 28, 2023 · Foldseek aligns the structure of a query protein against a database by describing the amino acid backbone of proteins as sequences over a structural alphabet. Foldseek decreases computation times by four to five orders of magnitude with 86%, 88% and 133% of the sensitivities of DALI, TM-align and …

DA: 43 PA: 79 MOZ Rank: 11