cibersort | CIBERSORTx - Stanford University

Keyword	CPC	PCC	Volume	Score	Length of keyword
cibersort	1.04	0.9	4729	71	9

Keyword	CPC	PCC	Volume	Score
cibersort	1.38	0.8	3946	52
cibersortx	1.77	0.4	6158	4
cibersort github	0.27	0.7	8171	85
cibersort-abs	1.31	0.6	7757	23
cibersort r package	0.72	0.8	5230	21
cibersort algorithm	0.6	0.3	3438	62
cibersort lm22	0.3	1	1150	68
cibersort analysis	1.13	1	490	63
cibersortx docker	0.09	1	693	74
cibersort lm22.txt	0.61	0.4	8463	16
cibersortx github	0.66	0.7	1269	3
cibersortx r package	1.71	1	1470	18

Search Results related to cibersort on Search Engine

CIBERSORTx - Stanford University
stanford.edu

https://cibersortx.stanford.edu/

WEBCIBERSORTx is an analytical tool from the Alizadeh Lab and Newman Lab to impute gene expression profiles and provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data. EcoTyper, a machine learning framework for the identification of cell states and ecosystems from bulk, single-cell, and ...

DA: 98 PA: 89 MOZ Rank: 62

Robust enumeration of cell subsets from tissue expression …
nature.com

https://www.nature.com/articles/nmeth.3337

WEBMar 30, 2015 · We present cell-type identification by estimating relative subsets of RNA transcripts (CIBERSORT), a computational approach that accurately resolves relative fractions of diverse cell subsets in...

DA: 53 PA: 90 MOZ Rank: 95

Robust enumeration of cell subsets from tissue expression profiles
nih.gov

https://pubmed.ncbi.nlm.nih.gov/25822800/

WEBWe introduce CIBERSORT, a method for characterizing cell composition of complex tissues from their gene expression profiles. When applied to enumeration of hematopoietic subsets in RNA mixtures from fresh, frozen and fixed tissues, including solid tumors, CIBERSORT outperformed other methods with re ….

DA: 93 PA: 28 MOZ Rank: 22

Profiling tumor infiltrating immune cells with CIBERSORT - PMC
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895181/

WEBCIBERSORT is an in silico approach for characterizing cell subsets of interest in high-dimensional genomic data derived from bulk tissue samples. Given a validated signature matrix, CIBERSORT can profile compositional differences in a standardized manner, facilitating robust and reproducible analyses of cellular heterogeneity in both new and ...

DA: 34 PA: 56 MOZ Rank: 83

Profiling Tumor Infiltrating Immune Cells with CIBERSORT
nih.gov

https://pubmed.ncbi.nlm.nih.gov/29344893/

WEBCombining support vector regression with prior knowledge of expression profiles from purified leukocyte subsets, CIBERSORT can accurately estimate the immune composition of a tumor biopsy. In this chapter, we provide a primer on the CIBERSORT method and illustrate its use for characterizing TILs in tumor samples profiled by microarray or RNA …

DA: 11 PA: 16 MOZ Rank: 66

Determining cell type abundance and expression from bulk
nature.com

https://www.nature.com/articles/s41587-019-0114-2

WEBMay 6, 2019 · We now introduce CIBERSORTx, a machine learning method that extends this framework to infer cell-type-specific gene expression profiles without physical cell isolation. By minimizing...

DA: 6 PA: 6 MOZ Rank: 7

Profiling Cell Type Abundance and Expression in Bulk Tissues …
nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7695353/

WEBCIBERSORTx is a suite of machine learning tools for the assessment of cellular abundance and cell type-specific gene expression patterns from bulk tissue transcriptome profiles.

DA: 69 PA: 44 MOZ Rank: 77

New way to sort cells without limitations of traditional methods
stanford.edu

https://med.stanford.edu/news/all-news/2015/03/new-way-to-sort-cells-without-limitations-of-traditional-methods.html

WEBMar 30, 2015 · A paper describing the method, called Cibersort, was published online March 30 in Nature Methods. Analyzing and sorting individual cells according to the proteins they display on their surfaces is an essential part of stem cell science and cancer research.

DA: 93 PA: 1 MOZ Rank: 58

Expanded CIBERSORTx | Nature Methods
nature.com

https://www.nature.com/articles/s41592-019-0486-8

WEBJun 27, 2019 · Newman et al. introduce a machine learning method that extends the authors’ previous tool CIBERSORT, developed for the estimation of cell-type abundance from bulk RNA-seq data, to CIBERSORTx,...

DA: 77 PA: 77 MOZ Rank: 12

Determining cell type abundance and expression from bulk ... - PubMed
nih.gov

https://pubmed.ncbi.nlm.nih.gov/31061481/

WEBWe now introduce CIBERSORTx, a machine learning method that extends this framework to infer cell-type-specific gene expression profiles without physical cell isolation. By minimizing platform-specific variation, CIBERSORTx also allows the use of single-cell RNA-sequencing data for large-scale tissue dissection.

DA: 12 PA: 33 MOZ Rank: 47